2 Oct 2008 rufius   » (Journeyer)

More genomics…

After some misunderstanding, now have a program that does what is needed. Seems slow and memory constraints on loading higher level distributions is difficult (kmer size > 9).

Started a run last night(~18:00) on 625 genomes (50 Archaea, 525 Bacteria), still running. Got no significant results from 3-5-mers, now running on 6-9-mers.

Have a completed run from just doing Archaea, results not so great, around 1.1-1.6% success in identification with 10000 samplings. See graph below:

Syndicated 2008-10-02 18:00:59 from blog.zacbrown.org - just run away, now.

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