I spent most of Saturday playing with LinuxPPC 2k. In particular, I spent most of that time playing with yaboot, the next generation boot loader for LinuxPPC.
It sucks. Hard.
Actually, to be fair, yaboot itself is fairly clever, albeit not without its flaws. The instructions provided by LinuxPPC.com however do not in any way, shape, form, or fashion reflect what is actually necessary to get yaboot to function properly. After a great deal of searching on the linuxppc mailing lists, I found myself in possession of a pile of unorganized information, some of it contradictory. If you are in the same boat I was in, you might be interested in this text file, which contains some of the more useful tidbits.
At some point, I plan on organizing this better, since there is precious little online help for yaboot. But in interest of contributing to the community, here is the distillation of what I discovered. This document contains my working notes on getting LinuxPPC working on SCSI drives.
L-J 12-6 systems
This is actually a note for macricht, since I am too lazy to find his email. Two things you may want to check for in your broken L-J code, if you haven't already are (1) the starting positions of your atoms and (2) the signs on the terms in the force calculation. If two of your atoms are too close, the force between them becomes large, quickly. Since there is no damping, this plays hob with the energy of the system. Also, if you botch the signs when you take the derivative of the L-J energy expression, and both components become effectively repulsive, that can have untoward effects on the system energy. I made that mistake when I first did L-J. Good luck!